Scaffold Ga0126383_10032095

Overview

Basic Information

• Taxon OID: 3300010398
• Scaffold ID: Ga0126383_10032095
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_35
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4180
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000647	Metagenome / Metatranscriptome	961	Y
F050942	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126383_100320955	F050942	GGAGG	VGRARENRKFIQAPSPEIWSETISGGEEVLAQKWGGLFWATSLEEIFGGVIAIISFRPGGWMQQSAVPRCAILSVGSTGGIRL*
Ga0126383_100320956	F000647	N/A	LNGEFIAALLRDFRHGGPKAIERVRRTQPAAYLKILALLVPREHKVEHSNPLKGLTDDQLEAMIAYLETSLAAQAGGPVKVIEATAEPALEPPKPKNRLMLEADTAVGPRERIPRKMRPPPGE*