Scaffold Ga0126383_10003072

Overview

Basic Information

• Taxon OID: 3300010398
• Scaffold ID: Ga0126383_10003072
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_35
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10975
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020251	Metagenome	225	Y
F031681	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126383_100030726	F031681	N/A	VTDLKTFQPAATKGKLASLFTMLEMSKEDRGKPIAARAIESCELIWSDDKSAFLFATAKPPTVATDSRIGVLFLLVHQREGWRIADLLRFTAIRKDAGVSAKLTAFTGSGRELDSEGFAPVVTVEESHGGCGYAYQTSAAYTFAGSKIKRFDLE*
Ga0126383_100030729	F020251	N/A	MTKRLCYIHVGPHKSGTTSIQWFLQENRAELLEHGYFVPESETKRGAHHTLAEGLAGLDVGEHRDPLVTRSIRAIAETPAETIIISSEALEGLLRNRRHTESFFNRIRELSLEPKLVLFPRNQPQWINSSYPSTVKSFRRSDSFQPGVPGFAQSPDARFSRWIDLAETHNAELIARPFNKETLRRGVIPEFLRSVGITSSQFRDSKVRRHEAVGPFTVSVAREVLRSIGKQLTWLQAEKCKVELAEYLRQNRMVDAGYCGLTTAMAREVEEELRSDNDAFAQRVWGKSWADVFAVDVSEEFTPNDFEIRRPDWFTARRLRRAIRTMKTRADEILQDSAMAVEAPWNDIALRSGLVPRDYS