Scaffold Ga0126383_10001889

Overview

Basic Information

• Taxon OID: 3300010398
• Scaffold ID: Ga0126383_10001889
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_35
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13255
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002416	Metagenome	561	Y
F009773	Metagenome	313	Y
F035446	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126383_1000188910	F002416	AGGAG	MNNLIAITSVPGIEDSAAVKIGRKLIALALTVKALNGPIAAVLVMLLGVVSVSAQTPSGTFFNGNSSQLGNSLRSITFFLAAAMIIAGIIFIAYGIITSGLKESLSTWKFITGAACFAFGGVCAAIYAFSQGETVPLDNQF*
Ga0126383_1000188911	F009773	N/A	MEVAAMRARPIRPNIYLPVVRFGVADSDWFSVLLISCAGYLLPVAFGITILYVPLQMWTWLIATAGSIAFFNYIRIGKPPSWLPHKVRATVVHHKQNRAIPNHRKRGSQRAWLISDGLHNPECLADLQRTSATVLIEHNTRFQEESANQWNALLLTTN*
Ga0126383_100018894	F035446	GAG	MKARIHGSVWPVVSVAAGAFFVLVIVPLILQREKGARMATVDPRVTIGDFGTDSPTSRNAPLYRWPDSEVPRTAERLRDSAAVAVAAVTYVTEGAIKGHTPRDVREIVSVIAQRHLIPEEWNTNQPGVLRMPRGTIHLRYSPRDLQIEVVSVPNARVDGPAILIRIPDPENTSVGPRYFESMQLDGIVYPNPFAPIAEIVASGWEPRLFKQAQLPDDQRAQIEQWAQTQASR*