Scaffold Ga0134124_10038957

Overview

Basic Information

• Taxon OID: 3300010397
• Scaffold ID: Ga0134124_10038957
• Source Dataset Name: Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3968
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Kellog Biological Station, Michigan
• Coordinates
  • Lat. (^o): 42.3938
  • Long. (^o): -85.3708

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011259	Metagenome / Metatranscriptome	293	Y
F011803	Metagenome / Metatranscriptome	287	Y
F023966	Metagenome / Metatranscriptome	208	Y
F044745	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134124_100389572	F011259	AGGAG	MSRQDDNRVLARTGARELTSEEAEFVSAAASAHTNVCTAMMATATHTGSGDGDGCSDTDTHFI*
Ga0134124_100389576	F044745	AGGAG	MNDQNRVLVRRGARDLNEHEVAQVSGGLRTLTACTLAAAGTLDGDTFHSECGSPDQ*
Ga0134124_100389577	F011803	AGGA	MNDQNRVLIRRGARELTPTESALVNGGFITFSLCTNNPSPDGDQHVGEVGC*
Ga0134124_100389579	F023966	AGGA	MNSQSRVLIRQGARELNEHEVETVTGAFRTRHTLTPCFVDSKQQFLNGDQAIGECGG*