NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134126_10000139

Scaffold Ga0134126_10000139


Overview

Basic Information
Taxon OID3300010396 Open in IMG/M
Scaffold IDGa0134126_10000139 Open in IMG/M
Source Dataset NameTerrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)96828
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (69.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Kellog Biological Station, Michigan
CoordinatesLat. (o)42.3938Long. (o)-85.3708Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020950Metagenome / Metatranscriptome221Y
F058303Metagenome / Metatranscriptome135Y
F100266Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0134126_1000013932F020950GGAGGMQGVMSAASLALTALMIFATGCATEEHRMNVAASRDDSRRAEFEHCRAEGRTDCDAILNAPVNSNTPESDSVRDQERHKAYDRCVARGGTDCDDLLHR*
Ga0134126_1000013959F058303N/AMEHGHFIQPPTTEGPFCERHPFGEVKRGEIQHTTERTASEPVPIASDDHPSDASKLLVLNHPLDPLPIEVARVRRGVVKRFTGRFIRDGEIGWAAIDLERLIAVSVERRVFDLRAHQSRAVPDPVFSQIEQLSFARKWTDGKRTEVEVVKVFPITMPEAQLVVCASNPLWADKGPLPDEDTTEMTDGIIDVFLLDRRQAQDLSYKYTKPIYLSESLANILGGIWEHAPQGPAW*
Ga0134126_1000013969F100266GGCGGMIVRLDLRLYSTGMQSAIAHPERLKLAGSERVKYFAPVAICVYLAGLCVALMITSAFLDNMRDAIAVTAAGLFGLLASGALGTAILRMQLRELSFQVVRTQSDAATNFDAVVELAQSSGWRLTGRVPGRCLEARTPGSILTEGEIVAVKFRGSEVLVACICDPGVGFSLVGRRRCVQNRDLVRRAVGGK*
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