Scaffold Ga0134126_10000134

Overview

Basic Information

• Taxon OID: 3300010396
• Scaffold ID: Ga0134126_10000134
• Source Dataset Name: Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 97644
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (59.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Kellog Biological Station, Michigan
• Coordinates
  • Lat. (^o): 42.3938
  • Long. (^o): -85.3708

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002416	Metagenome	561	Y
F009773	Metagenome	313	Y
F035446	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134126_1000013429	F035446	GAG	MSIRERGNVWPVFSVAAGAFFVLVVMPLILHRQKSGQMATVDAQVTIGDTSSESVVNPSGPSYRWPDSEVPRTAERLRDLTAVAIAATSNVVEGRLHGQNARDAGEILTRIAQRQLVPADWLTQQPGVLQTSYGTIHLRYAPQTLTLEVLSVPNDRKDGPAMLIRIPDSENTSVGPRYFESTHLDGIIYPSPFAPIAEVIATGWQPRQFKQAQISDEQRAQLEQWVTSVVSK*
Ga0134126_1000013435	F002416	AGGAG	MNTLMDLRAFPGLEDSRAARFGQRLVTLALLVKSANGIIATILMMLVGVVSVSAQTPSGSFFNGNSSQLGNSLRSVTFFLAAAMIIAGIIFIAVGIITSGLRESLSTWKFITGAACFAFGGVCAAIYAFSQGDSVPLDNTF*
Ga0134126_1000013436	F009773	N/A	VADSDWFTVLLISCAGYLLPVPFGMTVLYVPLQMWTWLIATAGSIAFFNYIRVGRKPRWLPHRLKAIFFHHRQNRSLPNGKKQGFQRPWLVGLGDDEPSVATGAGESAVATNRLLLQVNRDFQEACEEKWNPISLTTN*