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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300010396 Open in IMG/M |
| Scaffold ID | Ga0134126_10000039 Open in IMG/M |
| Source Dataset Name | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 163996 |
| Total Scaffold Genes | 140 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 78 (55.71%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Kellog Biological Station, Michigan | |||||||
| Coordinates | Lat. (o) | 42.3938 | Long. (o) | -85.3708 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F038402 | Metagenome | 166 | Y |
| F052827 | Metagenome | 142 | Y |
| F087261 | Metagenome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0134126_1000003917 | F038402 | N/A | MAILITYPDGSTEIIPRAVTVDTQNFHEGMYDFYDDAGALLAQIDMHNQIKWEVVAEPENSK* |
| Ga0134126_1000003995 | F052827 | GGAG | MKTILQIFCASVLVSAAMIAIQAQSTGPTGPTPAERQRGIDPDIEQRQRDMRLLDRSMKAREEGGKPAKPRDPKVVMAEITEDFTRIQIVNNDLGEAASGPAPLNLEFVIKSTAELVDRTKRLGENLGRPEPEKGSTPPKLEPLTNLGELKHALAKLDDLITEFIHNPLFTDAHTRNAELFVKARRGLVEIGELSAHIKKNTEELSKAAKPSP* |
| Ga0134126_1000003996 | F087261 | N/A | LKVSLHALILLTSLCCAPIAAQKASVSISKRASRIPKVCEDVIAAAIDDPIDVPALVKEAVCKGAGDMMTDYTYVMTSVGRSKNKKGETKEESTTYEVFIPTLKSGTRGKGIMVVTSRNGVPVPADELEKTRLEAGKRLEKAEEKNANEKPSAPESDPEVKGMLPLGMYAKTTDNHTSTFGKSGSAALAIQTFLKNCDLSFLRREQHQGRETLIFKFTPRPGAQFPDNEKYVAQLTGEIWIDAQDRIATRLVGWPTSSASNPAQPIPTPSEAPPAVYVEMMRLPERIWLPRIMRINGADYQTLFDGITSESVSTFSNYIRFSTEIKDVKINSDSKP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |