Scaffold Ga0058701_10061784

Overview

Basic Information

• Taxon OID: 3300010395
• Scaffold ID: Ga0058701_10061784
• Source Dataset Name: Agave microbial communities from Guanajuato, Mexico - Or.Ma.e
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3129
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Chenopodiaceae → Chenopodioideae → Atripliceae → Chenopodium → Chenopodium quinoa (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 21.0936
  • Long. (^o): -100.2988

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033294	Metagenome	177	Y
F035162	Metagenome	172	Y
F074316	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0058701_100617842	F035162	N/A	MRCLENYIAVFSQYYYKFGHNDINLGTFYDKLPYPINFIINEKYMAWLEKADVFDTLGTRISCLRKWVNDQCLDLKKQKKIKNNILLLGYS*
Ga0058701_100617843	F033294	GGA	MNSVLNLNTTWIAANFLNYIEHSFSGTVADWYDSLNEEGKNELRIMEIAEAMFKKLCKGIEIEFIGSKLDSEEKTENGRER*
Ga0058701_100617845	F074316	N/A	MLQSSNSCPNPGYSHIVHSSEGFTTLAPQLNYITDIVLELKEELAKIKTEMKEINKQLTVTHLFLVNKIRHSGKSDLGISSPFQHKYPFQNPKTKNLFPIQGQKTHEEAEKSLEIFLGKD