Scaffold Ga0126341_1024678

Overview

Basic Information

• Taxon OID: 3300010394
• Scaffold ID: Ga0126341_1024678
• Source Dataset Name: Coral microbial communities from Florida Keys, Florida, USA - Orbicella T D metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1107
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Tunicata → Ascidiacea → Stolidobranchia → Styelidae → Styela → Styela clava (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location

• Location Name: Florida Keys, Florida, USA
• Coordinates
  • Lat. (^o): 24.6669
  • Long. (^o): -81.5441
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001193	Metagenome / Metatranscriptome	751	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126341_10246782	F001193	N/A	MVGQMAIAIALPGFNDLGRSVTPIFLLMDHFLYRFSTIGEKMKKIYRLEV*