Scaffold Ga0118731_102542057

Overview

Basic Information

• Taxon OID: 3300010392
• Scaffold ID: Ga0118731_102542057
• Source Dataset Name: Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: JGI facility at Oak Ridge National Laboratory, Brown University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9591
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine → Coastal Sediment Microbial Communities From Rhode Island, Usa

Source Dataset Sampling Location

• Location Name: Rhode Island
• Coordinates
  • Lat. (^o): 40.435
  • Long. (^o): -70.483
  • Depth (m): 78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023087	Metagenome	211	N
F047026	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118731_1025420571	F023087	N/A	STNDNRSAVVRFFFKQLSDVRQTYTGIFGSESGEDKETSGKKVETFESKYGWLNVVNNLSNNDATKWGYFFALPLREFLNLISFQKAKQNHEYHQMKQNGVR*
Ga0118731_1025420573	F047026	AGAAGG	MAIFVTFPDGEPVDYNTAYNDNVWVFKTTTNTPTVRFLIRVYDQANNELGRFRVYPTTANNGTNYQTAFFDPSRVLQSLISGDIDIQGANHNGFLTSNNMHQEYYLAVNEEDVDANETYVSGEGFRPVTFPLKSVWNGSIKQLEWLTFDYNDYTILNSPSTTKKFLTYSPRTIRIDSNQSYHLYFLAPERFAAAQYNIKAYSGYNGTGSLLADGVVTNNISVADDYDKIYFRIPVGTYDIGNIDPSLYTDTLLGSTPSTALNGAASYTIQLEDSSNAQTSERFTFNVDYTCSKYQPVRLVWLNSLGGYDAMNFYQKSIINTDIKRDQYEQQNHDWTGFAYKYSKSSRGNTDYNVSTLAKRTINTDYLTEDESLWMEDLATSPDVYLEDNNQLIAVNINQRKIQRKTSLNDKLMQNTFEIEQSIKNRRQRG*