Basic Information | |
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Taxon OID | 3300010391 Open in IMG/M |
Scaffold ID | Ga0136847_13262048 Open in IMG/M |
Source Dataset Name | Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Minnesota - Twin Cities |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4674 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → unclassified Peptococcaceae → Peptococcaceae bacterium CEB3 | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment → Lake Superior Sediments |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Superior, USA | |||||||
Coordinates | Lat. (o) | 47.1675 | Long. (o) | -89.65985 | Alt. (m) | Depth (m) | 190 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F034662 | Metagenome / Metatranscriptome | 174 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0136847_132620483 | F034662 | AGAAGG | MPTVDVAALGTARKMLGFSRRTVSFDQGTVADLLRSLDTVEGRNLYVNLTSEGRLRGDFAVLVDGLSLKPDQLDRPLSGGEQIVTLAILRHLHGG* |
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