Scaffold Ga0136847_12280934

Overview

Basic Information

• Taxon OID: 3300010391
• Scaffold ID: Ga0136847_12280934
• Source Dataset Name: Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11978
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment → Lake Superior Sediments

Source Dataset Sampling Location

• Location Name: Lake Superior, USA
• Coordinates
  • Lat. (^o): 47.1675
  • Long. (^o): -89.65985
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005419	Metagenome / Metatranscriptome	401	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136847_122809346	F005419	N/A	LRRVTGREGLIVAGGIGETVIDGKDSQPVRATRGGRKPRTGQGDGAEGLRFFLAKHGAADGIPSFDKEFTTEPEAIVESLKTGLSYYAVSEWRGVADFSGRKPQLRREAVTRPRKTA*