Scaffold Ga0136847_11201905

Overview

Basic Information

• Taxon OID: 3300010391
• Scaffold ID: Ga0136847_11201905
• Source Dataset Name: Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1248
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment → Lake Superior Sediments

Source Dataset Sampling Location

• Location Name: Lake Superior, USA
• Coordinates
  • Lat. (^o): 47.1675
  • Long. (^o): -89.65985
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002477	Metagenome / Metatranscriptome	555	Y
F003507	Metagenome / Metatranscriptome	482	Y
F022502	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136847_112019051	F002477	GGA	MHSLAGDLGVNDPVVRQALHARHILSVGIPKTVEPLTPDPSAEEILAILKEANVQRKRTPYHVQLACASGCSRPVVESHIATVLARGAGTVRSKGLAGAVVQQGMTVMSYNGAVLVRIRQRKITKRAQKFRRLL
Ga0136847_112019052	F022502	GAG	MRSFGRSGRGHGKVFVTLVRHTEHQLLERGKDLTTLAQQAHTCLDNTTTLRETQRERLREDLTTAMRHHEHIRQQSTHLTQGTTLRHWKVVNAYDPTMAPMLTGTSNCPAQFGRTPGMISEPATGCIFANLTPQGNPNDASSVLP*
Ga0136847_112019053	F003507	N/A	MYAAGLREYHINPSQDHCVLPTTLCECRGRRDEALMDERIAIQAAAAMAEDLVSPAPLVVDTFPCEQGSQRVTDATTL*