Scaffold Ga0136549_10076424

Overview

Basic Information

• Taxon OID: 3300010389
• Scaffold ID: Ga0136549_10076424
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1637
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Baltimore Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 38.05018333
  • Long. (^o): -73.82193333
  • Depth (m): .12 to .14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011403	Metagenome / Metatranscriptome	291	Y
F011589	Metagenome / Metatranscriptome	289	Y
F067803	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136549_100764241	F011403	AGGAG	MAIYNVSAGSEAVLHLSATSADEANVSANALVVLSMQDITVNNSTGVFRWKTLDNTAENAATTPATNQISLNCVVDSNVFFGTGTGGDDDAKENGLFGVSKDKTKVYFNVYFDGTDTGSKFIAGSGYVSGLAPTVNMDAPV
Ga0136549_100764242	F067803	AGGA	MAFRDTLKANLDVALASTNVSVSAELPFSSAGEPLYTKNMKHVYLDEDNISKTQLFSTLDKSDVMQTDTTVTAYLAVDAKNDLSDIDTVVASILNSRNAVTGQTVNECEMETDITDDILTYTFNFNFITV*
Ga0136549_100764243	F011589	AGGA	MAFVISGGAVVTYAEALDVKDKDQRVFEANEIDFTNVPDNPGSLDNYIEDLCIKATNRINEKIRMSARWREYLGYAGAGYDSIDNIPAFEGIKIKAKQSTFTDMTAYYVLKEYLLPKIADFGNPESSEVQKIQYYXXXXYYENKFNDLFTELTNVFDYYDSDGDGTVEDGEKMVRFSRTRRTRGRKAVTRIR*