NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136549_10028863

Scaffold Ga0136549_10028863


Overview

Basic Information
Taxon OID3300010389 Open in IMG/M
Scaffold IDGa0136549_10028863 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3149
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location NameBaltimore Canyon, US Atlantic Margin
CoordinatesLat. (o)38.05018333Long. (o)-73.82193333Alt. (m)Depth (m).12 to .14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010532Metagenome302N
F032867Metagenome / Metatranscriptome179Y
F042853Metagenome / Metatranscriptome157N
F046985Metagenome150N
F067760Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0136549_1002886310F067760N/AMRVRRIDMFIMRKYGDYCDESLRYNDIQKTFQAWKEDNIVSLVKEYKEYRRLDRYGSKI*
Ga0136549_100288633F042853AGGAGGMSKEGTYLIEIERHYIATIEVDAEREGEAIRYAYSDENQHIANRNEDYFHNFQEIEHEAKVVRFKSYEDQYPDED*
Ga0136549_100288635F032867AGGAGMDDFEKMIDDLIDNHYRRQHLIGTEADESEYLADISEEDDE*
Ga0136549_100288638F046985AGGAGGMSDLLELYNESWSKEFNVDVDASKSMKVHVAPKTYAMLVQIGVFNIHSRGIHDWVSKVDVEAIYMNLDFSVDMLLQNYQAIKMAVMLKEYPFDRGYQQQADKIWNNILQHLSEFNPEDAEELRNKLFKRRVA*
Ga0136549_100288639F010532AGGAGMNRTLYKKLEDICARKYILNKLSATKFRTFVDFLYDDIRTWDKPMEVSEVDIIHRIEEHMSYMVSSYLNKPYEGTSMDEQALRGA*
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