Scaffold Ga0136549_10020578

Overview

Basic Information

• Taxon OID: 3300010389
• Scaffold ID: Ga0136549_10020578
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3967
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Baltimore Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 38.05018333
  • Long. (^o): -73.82193333
  • Depth (m): .12 to .14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038652	Metagenome	165	Y
F091963	Metagenome / Metatranscriptome	107	N
F097249	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136549_1002057811	F097249	N/A	MKLSVFDLHRGCTEYVELPSGRCVNVHVARLANTTEVHVQANSEQWPQEYSDTFLHCKRCVNVFHSASKSLTHADIEYLQDRYFRPYEELTFA*
Ga0136549_1002057813	F038652	N/A	MTIMTHTIDTVAARELEVYAVNFSESHYNNVGKTLSKFYKQGTFNLDRAIAYIERYLLVPAAKDYKLINGSMSTPWNTMFPKPERLVAAESIAHSFVSEFRLGNFW*
Ga0136549_100205786	F091963	N/A	MTNHIPYDLYALDWHSLAYHSLARFKQIVQRDNMLPADVCEQIEDHIIPALEYLEGWEPSDADIQAHIDSRGMF*