Scaffold Ga0136549_10016083

Overview

Basic Information

• Taxon OID: 3300010389
• Scaffold ID: Ga0136549_10016083
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4702
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Baltimore Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 38.05018333
  • Long. (^o): -73.82193333
  • Depth (m): .12 to .14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029774	Metagenome / Metatranscriptome	187	Y
F062573	Metagenome / Metatranscriptome	130	Y
F099390	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136549_1001608312	F062573	GGAGG	MVKKKLKEYEVLEVRGFIVHAFSEKHALDKFGRYDYVSEGDVWPEVRELGPVNPTGTGPE
Ga0136549_100160837	F099390	GAG	VKDGTYVVRLDDEGIPMLANQINMSDGYWVSDDSGVSVHGELESNAVLDALSLMDIQDGEIVGVWQNKEVSYIDRSYHFRNKDTALTVGEAFKQIAIWDCANSKTLDIRYS*
Ga0136549_100160839	F029774	GAG	MARSISVKVPTAMLIQQIEERIAQIDADIEEYPAKREAFDKAEEAYKAQVANFVAAYLGENLDKIGFSYEDIIRINTGFVGFRSNGGKVELTFDTDAIVGFPERPVAPEKPNQRESFGRDYSTRKELLEKNLRILKMTSQEEVNASTYGAIMEIL*