Scaffold Ga0136549_10010968

Overview

Basic Information

• Taxon OID: 3300010389
• Scaffold ID: Ga0136549_10010968
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6054
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Baltimore Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 38.05018333
  • Long. (^o): -73.82193333
  • Depth (m): .12 to .14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006772	Metagenome	365	Y
F045677	Metagenome	152	N
F048238	Metagenome	148	Y
F056529	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136549_1001096810	F045677	N/A	MKEIKTLLPEELIERLSAEAKEKGLHRSELIRERLSQPPNHFGLTTSDFHKAVTKVRRRSSYGLDRQQAESLVATVFNTLFSPGHGD*
Ga0136549_100109687	F056529	GAG	MATKHGNRVYIQVLLEPFRGELFMQEADAQGIKPSALIRQLVYNYLAENTDEQAYCEALVNDKQKWQDAVDARLEGRAKNRRSKIDQSEQSIDASSSPI*
Ga0136549_100109688	F006772	N/A	MPQPKSGRQIVMERLNKAIQLATTADLQRAAMFLEGAREVRQGSRRQRTNARSAQATAWKKKVDDSITW*
Ga0136549_100109689	F048238	N/A	METNSVHFQYCQIADEHCPLAITRFTSFDLDNKPLSVEQVTYESNMDYMERQVISALRCNVEVSILTSIPIHEFKRLHHLFKSNE*