Scaffold Ga0136549

Basic Information
Taxon OID	3300010389 Open in IMG/M
Scaffold ID	Ga0136549_10009965 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6423
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (52.63%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6423

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (52.63%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location Name	Baltimore Canyon, US Atlantic Margin
Coordinates	Lat. (^o)	38.05018333	Long. (^o)	-73.82193333	Alt. (m)	Depth (m)	.12 to .14
Location on Map

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Source Dataset Sampling Location

Location Name

Baltimore Canyon, US Atlantic Margin

Coordinates

Lat. (^o)

38.05018333

Long. (^o)

-73.82193333

Alt. (m)

Depth (m)

.12 to .14

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011666	Metagenome	288	Y
F026260	Metagenome	198	Y
F035748	Metagenome	171	N
F059943	Metagenome	133	N
F080644	Metagenome	115	N
F103222	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136549_1000996510	F103222	N/A	MDREKLVAAMRQEVQQIVALQTMLKNVAKAEEQGYQKADQRRLDAIADLFAGGNESLMTAYYKVKDEQGR*
Ga0136549_1000996516	F035748	N/A	MKLYAPEYAGMTVWAVADPKSGKGAYTATKGNTPPPNASYGHPIGRYDSDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGVDEQRAAIKAKAWGTLSSMGSYKETEF*
Ga0136549_1000996518	F026260	N/A	MKRTFDTASAVKTLRDGLAKGYWTLEDLDTPPPGTQMTFADYRRYCVAQGYVGNQPVYRNLLREAEENQQDDFIL*
Ga0136549_1000996519	F080644	AGGA	VKIVTITESNGCAVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKHALRRWKQKIIAEGGDPDETRDQAARRGSLIHDWFELFLHHKAPEPPEAIAPWCERIKTSPLWQHLDHVVCTEHQVCSDEGAVPFAGTLDALVKLNGEFVLMDL
Ga0136549_100099655	F011666	GGA	MFSEAATAKILEEWLRAGDIKGIYNAALLLNTSLHQQRTMTKWLAGEAARNLGKPELEDELIQDAILMGDQ*
Ga0136549_100099659	F059943	AGG	MNKVANFAELFPDWQEPNRGPGVSYCVAPNARMFDYELLLPGERSLRGCIRAVDKQDAIRILNNRHPNCSVVEVSKGRRIVSQKKKA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0136549_10009965

Overview

Ecosystem & Geography

Associated Families

Sequences