Scaffold Ga0136549

Basic Information
Taxon OID	3300010389 Open in IMG/M
Scaffold ID	Ga0136549_10001980 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0136549_10001980 Open in IMG/M

Source Dataset Name

Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15366
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (26.32%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

15366

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (26.32%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location Name	Baltimore Canyon, US Atlantic Margin
Coordinates	Lat. (^o)	38.05018333	Long. (^o)	-73.82193333	Alt. (m)	Depth (m)	.12 to .14
Location on Map

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Source Dataset Sampling Location

Location Name

Baltimore Canyon, US Atlantic Margin

Coordinates

Lat. (^o)

38.05018333

Long. (^o)

-73.82193333

Alt. (m)

Depth (m)

.12 to .14

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013505	Metagenome / Metatranscriptome	270	Y
F032199	Metagenome / Metatranscriptome	180	Y
F057999	Metagenome	135	Y
F059774	Metagenome / Metatranscriptome	133	N
F091611	Metagenome	107	N
F098941	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136549_1000198024	F059774	AGGAGG	MAFFNYETEWENDPELDWDRTDRRARRLSLQQLEGRLEVWKQKHDDLCLKLYRAATGI*
Ga0136549_1000198025	F098941	GAG	MPFLLKTMNTASPSFYRWGSKQELSAFTADNRLVMSMGSPIANVPITIKELQSFVCTLEQAMEDEANAAQRFDLNTIRLIFQSSLKQAQKDYEEVVSEAPTGTDLEEYMLAYARAVQGGAV*
Ga0136549_1000198031	F032199	AGGAG	MAEIIENEFCESPKSCMAVAYRRETGEELIPAGLDAAYAEIIDSVHGEMEEFVRKYCPKRLVELDAMMEQAFWQYH*
Ga0136549_100019804	F091611	GAGG	MSYSLIVDDEWGVPYALKTFDTLQEVHDEIKALEDAMEEASNGHAYALQACIDQLWQIVHEAEEEPETLPD*
Ga0136549_100019806	F057999	N/A	MTDRLIFTMAAFSPTQGQWWRSCAPKGTERRVKLVASCMGFWLWTADFRDARTNKLLTSKFFCTKPNNEEPVALFENADDRQRWMERQWEAQAA*
Ga0136549_100019809	F013505	N/A	VKHFPSYEARLEADRQAQHSGYGIQPYHCADGTIKWEAYGWERITELQIHTTSYGIFDHKWEAEQYFNRIVH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0136549_10001980

Overview

Ecosystem & Geography

Associated Families

Sequences