Scaffold Ga0136549_10001925

Overview

Basic Information

• Taxon OID: 3300010389
• Scaffold ID: Ga0136549_10001925
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15539
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (48.39%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Baltimore Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 38.05018333
  • Long. (^o): -73.82193333
  • Depth (m): .12 to .14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F002317	Metagenome / Metatranscriptome	571	Y
F002867	Metagenome / Metatranscriptome	524	Y
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F007971	Metagenome / Metatranscriptome	341	Y
F017122	Metagenome / Metatranscriptome	242	Y
F021513	Metagenome / Metatranscriptome	218	Y
F090297	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136549_1000192512	F017122	N/A	MEVVPFQEQLDPELRLGEGRSRTSSEKAQLFELKIWLPGQGAMRDLVRAESLQQAIEFAQNRYPNCKVEVPNTAAKKPKLARAKNGPRETARRRLKLVEKKNESADC*
Ga0136549_1000192513	F006109	AGG	MTRYVVMVEDRWVTAVYGPGKGIGFTRSKEDASSWVTYERAVSAARTVAECTNSPVAVHSIDEPAYPRSWK*
Ga0136549_1000192515	F004722	N/A	MSRPQTGRELVLEWLNREIRAARTADLQRAAAFLEWARAIRKGCAKQRGGARVAQANAWRKKVDDDVRW*
Ga0136549_1000192523	F021513	N/A	MNMYILSAAQFDQIIKALDDARFALDTCQHIELDIADPKKTITLPSTEKAVRTTSVQKAKSQSKTRKSSRKGRRGVAVLTESKVLEIKRQLADGGKSVAKIAKEFGVHVTTINCIKSGKTWKNVQLQQPAAVVVAD*
Ga0136549_1000192527	F090297	N/A	MYEPFQAKVDNSDLSPWYYAVGWAKHSLQLQITRYQGMGLNTNYEEKQLERLVELEQFLKMSWDQWMESLLPSETAQEVK*
Ga0136549_1000192528	F001841	AGG	MRVAAWVFWRDPVKPEPPQPKRPRKPVLGYNVGDIPYELLAVVRVSWYRKGMAYEVEEYQIEESDDAPQQFAYIVGTALRQGADVCVLTQYEPEALGVHE*
Ga0136549_100019253	F007971	N/A	MAVKSKTALGRVEHKAGRPKTTSQGYGQHSRPARRGKKKLRGQGR*
Ga0136549_100019254	F002317	N/A	MDHHEEAFITAKPPKSPFDQVVPGLLTAAVVGLAGLFMQVAKLDQSVNTVAADIQELKNDSKERLSDLEIRVRQIEMRIGYKQ*
Ga0136549_100019255	F002867	N/A	MSVVNTTDYGNGFSLDQLENERGELYYRACKDSICRYAEDHYIAMMYLEGMGWDPKQQDPQ*