Scaffold Ga0136549_10001225

Overview

Basic Information

• Taxon OID: 3300010389
• Scaffold ID: Ga0136549_10001225
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19188
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (28.26%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Baltimore Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 38.05018333
  • Long. (^o): -73.82193333
  • Depth (m): .12 to .14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013631	Metagenome / Metatranscriptome	269	Y
F015080	Metagenome / Metatranscriptome	257	Y
F027828	Metagenome / Metatranscriptome	193	Y
F031454	Metagenome / Metatranscriptome	182	Y
F048940	Metagenome / Metatranscriptome	147	Y
F084145	Metagenome / Metatranscriptome	112	Y
F101038	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136549_1000122517	F013631	AGGAG	MILDVFHYTTSRWDWIDGNVNQMWIQEIEESPDCYRYVAVAYNPRKDASMVMSEPRCYADTLAFVRKWCNSFCILPEFSVAA*
Ga0136549_1000122523	F027828	N/A	MLDKVLMVEELLNEKQLAALRDMLYVYKGLQSEVHNYPPEDTLFTKTQFEIFDIFDIK*
Ga0136549_1000122527	F101038	N/A	MELTNSFPPVDAMVKKLQEFNYVKFGDNVVKYSVTAFAIAVAVSSYLWTAFQLWWDDNGEATQVNLIRFVVNVIDFIAAIVIATPKVYRWVKLNSNRLIDSLFFQVALA*
Ga0136549_1000122534	F084145	N/A	MFVICPKSFDLIDAEWFDTVYEAKEEALDWSVELSGESVIVYEAIEEEEGAYDFQKRYSICA*
Ga0136549_1000122538	F015080	N/A	MFNQLQFKAHNLPGAIQATYTFSNGWMISVVSGGPLYGRIEDDTYEVAIFRPNGNMTEDVIGWNTKDEVSAMMKVLVQL*
Ga0136549_1000122540	F048940	GAG	MTTAQRMEKQFFKNFIVLINEVQGKSKLPSQAYSTRKSAWVKQITNPRQKVDALSRV*
Ga0136549_1000122542	F031454	GAG	MHDSTLDLFCNSDDEIFADEYAQEFEEKANSLEITVDYYLMEFV*