Scaffold Ga0136549_10000423

Overview

Basic Information

• Taxon OID: 3300010389
• Scaffold ID: Ga0136549_10000423
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30946
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (30.51%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Baltimore Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 38.05018333
  • Long. (^o): -73.82193333
  • Depth (m): .12 to .14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F004106	Metagenome	453	Y
F007505	Metagenome	350	Y
F007971	Metagenome / Metatranscriptome	341	Y
F038601	Metagenome / Metatranscriptome	165	Y
F056571	Metagenome	137	N
F097251	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136549_1000042324	F056571	N/A	LIFSSTLARSTAAEVNFRVDTIYGLLTEGQSRGQIVQFGSKQWNITPRQVDEYIQRARIRLEEDAAMTRPSWIAEALGRARTYEQSAYKRGQTQVALNAIQLQAKLIGLEI*
Ga0136549_1000042326	F038601	GAG	MKLYSPDAKGKYVWQVADSKTRAVSYTVTTTRTPPLDACYGHPMGKYDDQGLYMTYCPNVGADDAKSPLAARYVVHPMAASERDKADTQRLWREI*
Ga0136549_1000042338	F097251	N/A	MDPMIILTDSQVIELNNRIGQIQRLLESAQVIKAGGAAQPKAVTEQAQPQSVTSKRRKAKRKTRGALDAAKVVEIKRRLAAGGESAQKIANDYGVHVTTVNLIKYGKTWKNVQVPA*
Ga0136549_1000042353	F002317	N/A	MEHHEEALITAKPPESPFNQMIPALLTAAVVGLAGLFMQVAKLDQSVNTVAADIQELKNDSKERLSDIETRVRNLEMTIGRYKQ*
Ga0136549_1000042354	F007971	N/A	MAVKAKTGTGRLEHQAGRPKTTSQGYGQHSRPRRRGKKPYVGQGR*
Ga0136549_1000042356	F007505	N/A	MSKLETLQSALTAREDEILGYQINIDNYTRAIDKINAAYADNSAMVEFRDRLAEMLEQHKTEQLKAIIIRDVIADQLTELEAS*
Ga0136549_100004239	F004106	N/A	MRGDDALDPAYSIGADFVNSTDAQTGRWNRITILKNNSSFAAITAENYTGNSLVGESLPAGFELIGVFTAFTLNSSGAVVAYKI*