Scaffold Ga0136551_1024670

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1024670
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1155
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011394	Metagenome / Metatranscriptome	291	Y
F072349	Metagenome / Metatranscriptome	121	Y
F105192	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_10246701	F105192	N/A	MNITTQIIITLFAASISGLLTAQINSRRAKKDKIAAAADKAHDQLLLEVKDLQIKLYKLEKDLTEWKEKYFEALQELIKVKAELEGTMLRLSHIEMHEEALDDI*
Ga0136551_10246702	F072349	AGGGGG	MDKVLCYSCNKSKNELSAKKSTLLAINLLLCKTCTENKLEPRWIVILAGRQYGADHVKEFIAKKKYIGLDITASELLI*
Ga0136551_10246703	F011394	AGGA	MFIDKGKNHFQHGINQWTGEPNKPVFYTKEMSRKVRELKCPAPGLEMDIIKYPEFLAIRLYENNFAQYDGSMRDRVIEYIEMVKNILESYGVRVELEGKPGGKNNG*