Basic Information | |
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Taxon OID | 3300010388 Open in IMG/M |
Scaffold ID | Ga0136551_1008546 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2186 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland |
Source Dataset Sampling Location | ||||||||
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Location Name | Jussy, Geneva, SWITZERLAND | |||||||
Coordinates | Lat. (o) | 46.25 | Long. (o) | 6.28 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007691 | Metagenome / Metatranscriptome | 346 | Y |
F038241 | Metagenome / Metatranscriptome | 166 | Y |
F040623 | Metagenome / Metatranscriptome | 161 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0136551_10085462 | F007691 | N/A | MTQTINTIDDLINEIYESNYSHLEFEENMGGEACDCHIHTTLNTIALYAGIEVGE* |
Ga0136551_10085463 | F038241 | AGGAG | MLGYTKEDLDQMSNSIHDAKLFYIMKSEVTYVDKDPIVDGLLKAQDFLQGLWAEGYFE* |
Ga0136551_10085464 | F040623 | AGAAGG | MKVKIAIEQIVDIDEAMSNDIGFEMYGPADMSTEDKVDYLIARFVEDIDTLVKYDEVIHQVSVEYIED* |
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