Scaffold Ga0136551_1008415

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1008415
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2204
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001507	Metagenome / Metatranscriptome	681	Y
F031497	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_10084151	F031497	AGGCGG	MSKTPEMKVAESLVNLMDDHWFNPTMFGRYLAEQPTYTIDRIMEMVVSIISEQAKMYNVYLNRNETTEGLSLANELNECIKAYQEDNNLINLKLPSRSFKVPKREEVREHRFGWRSEELDPFN*
Ga0136551_10084152	F000852	N/A	LKGDKQMATKREYLKQQGITVGVRGRFSGAAKVALAEAEAKGIKFTAEAPVKKAK*
Ga0136551_10084153	F000441	AGGAGG	MSDEYINDQLNTAQKLLWGGSETENIEAHNIIAKLIKDRIEQTNLI*
Ga0136551_10084155	F000263	AGG	MNAEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQELAEAQAIEDESEEAMDSMDRTRCEGALDTLVELYNLTYQLSFAIGAKNEA*
Ga0136551_10084157	F001507	AGGCGG	MDTKPYTIDELVTAIYEDNFSHFDFMDNMGGGDCDCNLHQTMNVIAAYQEGMVDGPWGDHF*