Scaffold Ga0136551_1007909

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1007909
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2285
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F007470	Metagenome / Metatranscriptome	350	Y
F020167	Metagenome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_10079093	F000311	GGAGG	MYFELAAKTSRSFRKAVWEAEIMGLDPEELDSLTFNIGTGSIEKVTNLREKYNLTEVYVSEFEPTGY*
Ga0136551_10079094	F007470	AGGAG	VDYQDGFQDGVKFAREVVIANIRKWAEDHDEGATVDWVADRIEFGTLDNDL*
Ga0136551_10079096	F000450	GAGG	VGDRANFVFVQPNGETIVLYGHWAGHNMLAKLADAVIAARPRWNDNSYATRIAISQLIGDQWNMETGWGLSVNTIQDNEHKIPVVDFEQQTFSLHEEAPYNDPSSKVKGMNNDAIFTQDLSSFCEKYADQLILT*
Ga0136551_10079097	F020167	N/A	MNTNDLINEIYMDNEQHLEYMENMNGGDCDCSIHITLNTICRYAGI