Scaffold Ga0136551_1006017

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1006017
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2692
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000852	Metagenome / Metatranscriptome	860	Y
F009685	Metagenome / Metatranscriptome	314	Y
F033433	Metagenome / Metatranscriptome	177	Y
F084239	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_10060173	F000852	AGGA	MTTKREYLKQQGITVGVRGRFSGAAKVALQEAESKGIQFTAEKVNKAK*
Ga0136551_10060174	F009685	GAGG	MKMSDQYVDTVLAEAQRLLWGGSETENIKAHNLIAKLIKDRSEKVEIDLS*
Ga0136551_10060176	F033433	N/A	VSLEILEVNYSISPGGADEFEVYPANEQYYVGGPLYSSTSLMEAVKYCYELGKDFTVRTLAQWEERELAYEA*
Ga0136551_10060177	F000263	N/A	MNNMNAEDIGLPPHLQRMVNARVSGLDILHGELKNLMLIAEQNLAEAQALEDESEEAMDSMERTRCEGVLDALVDIYNLTYQLSFAIGEQIEV*
Ga0136551_10060178	F084239	GAGG	MTRSSAFLEYMKLHEISLMQDLEKIDYVNEHHFYRVKEAEIYNTRHLLSVALDIMKSSNERYE*