Scaffold Ga0136551_1005766

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1005766
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2761
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003456	Metagenome / Metatranscriptome	485	Y
F048001	Metagenome	149	Y
F089954	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_10057662	F003456	AGG	MASKYDRVKGAVYETGILKLFRAIPGFLAERLTKAGAKDEGDIVTVIAGETYILELKNRKALSLPEFWAEAEVEALNYAKARGLEEVPFAYVVVKRRNSSLEKSWVICSLEQWIKEKQ*
Ga0136551_10057663	F048001	AGGAG	MANTEIQYLKKRVNQLEHDMKNMVMALIELKVFKIKVDADGNAIYDTGKDGE*
Ga0136551_10057668	F089954	N/A	VVIEDDEVDKNALHYLQLDSKIKELEKERDSFKASLEGSTGVTKSGIEISWTTVKGRETIDSKEVEKLLGFIPKVVGNETVRLNIKTNGGK*