Scaffold Ga0136551

Basic Information
Taxon OID	3300010388 Open in IMG/M
Scaffold ID	Ga0136551_1005654 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010388 Open in IMG/M

Scaffold ID

Ga0136551_1005654 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2792
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2792

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location Name	Jussy, Geneva, SWITZERLAND
Coordinates	Lat. (^o)	46.25	Long. (^o)	6.28	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Jussy, Geneva, SWITZERLAND

Coordinates

Lat. (^o)

46.25

Long. (^o)

6.28

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F009320	Metagenome / Metatranscriptome	319	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_10056541	F003521	AGG	MKSLVLNIRDYFNRRTRASDATKESDVNRKTLVIENGECASRLMKNEDFALLFNLYRFDLLARLEESRTDPERIENAFNVAGVRDFI
Ga0136551_10056542	F004695	AGGA	MLDKQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEQDSAQATQATEMVKYMLNSKNDSYAVIRDWAQDSLLHKNGIVMISPVREPIIQYKEVEGTKDQLRVFETMAAEKGLTAKRQNMRRIDVNLEGIAQEIMGPEEGEMGQSSSQEEMDEAIKANTIYRAKYKMTGYSTTVKIKHVAQHYFVCNPTISGIQDQDFVGFYDPMTIHECKSQFPYVDIEKLAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVEVCFSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQSSTPRIGVNPEFMDAEEIQRGVSAMFVLDRKFDPAKHVYEFSPMQGNLAYVESSMQRFEADKMAMIGMTSPGDVLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDAIYIIWKTLIQYADDYNIQQLANVCGKGAPFMDSISMNNYEFIDRKLINIDLALGFLSDENRLTRQQLIGQAQAQFTQAMMQIDPSVPELFEKIRRPFADTLRVLGVKDVDAYLPTIEEAAKLAQAQAAKGPSPEQQEIKSKVDLNNAKTQESQTVAALNVKKAEDIDTDNMFEALAAKRGKLSAVEID*
Ga0136551_10056543	F009320	N/A	EDNYGLNCIPGAILNPVNDQGKVTNHKSYGINIMRLGMERGTFKINEACVGFLDEARNYAIDDAGRFSDPDDHIDSARIGVLALIQGHGESTVSRANTFQFRRPAAIEGKAQRI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0136551_1005654

Overview

Ecosystem & Geography

Associated Families

Sequences