NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136551_1005326

Scaffold Ga0136551_1005326


Overview

Basic Information
Taxon OID3300010388 Open in IMG/M
Scaffold IDGa0136551_1005326 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2896
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location NameJussy, Geneva, SWITZERLAND
CoordinatesLat. (o)46.25Long. (o)6.28Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F001507Metagenome / Metatranscriptome681Y
F009685Metagenome / Metatranscriptome314Y
F050227Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0136551_100532610F001507AGGTGGMDTKPYAIHELITAIYEDNYSHFDFIENMNGGDCDCNLHQTMNVIAAYEEGMVDGPWGDHF*
Ga0136551_100532611F050227N/AAEFLRGQVISQSEYDNKCRDCDAENTLDYCEDCGEELCSNCNWLGEADLDAVKNCQTHAIYLDDNHIPAYRKVEA*
Ga0136551_10053264F009685AGGAGGMSDPYLDSVLNKAQQLLWGGSETENIEAHNLIAKLIKDRLGED*
Ga0136551_10053266F000263GGAGGMINLEHKPDYNIEPHLQRLIDHDVNGLDIMHGELKNLMLMAEQELQAAIEQEELSEEAMDSMQRTYAEGVLDTLVSLYDLTYQLSFAIKEKE*

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