Scaffold Ga0136551_1005326

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1005326
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2896
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001507	Metagenome / Metatranscriptome	681	Y
F009685	Metagenome / Metatranscriptome	314	Y
F050227	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_100532610	F001507	AGGTGG	MDTKPYAIHELITAIYEDNYSHFDFIENMNGGDCDCNLHQTMNVIAAYEEGMVDGPWGDHF*
Ga0136551_100532611	F050227	N/A	AEFLRGQVISQSEYDNKCRDCDAENTLDYCEDCGEELCSNCNWLGEADLDAVKNCQTHAIYLDDNHIPAYRKVEA*
Ga0136551_10053264	F009685	AGGAGG	MSDPYLDSVLNKAQQLLWGGSETENIEAHNLIAKLIKDRLGED*
Ga0136551_10053266	F000263	GGAGG	MINLEHKPDYNIEPHLQRLIDHDVNGLDIMHGELKNLMLMAEQELQAAIEQEELSEEAMDSMQRTYAEGVLDTLVSLYDLTYQLSFAIKEKE*