Scaffold Ga0136551_1004882

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1004882
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3051
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020906	Metagenome	221	Y
F030434	Metagenome	185	N
F090388	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_100488210	F020906	AGG	MPTSAQVAVADTATVIVAATAFDQTVCLHNLGGGAIYLGDAGVTTANGYKFDNGDKLTLMVGDHEALYGITASGTQTVAVLKQIN*
Ga0136551_10048824	F090388	AGGA	MALLKLNCRVCAKIGKGTQMHTIVNEFINLPPNVVCVQCTGCGVMGIEMLLDSERPTDEDILNA*
Ga0136551_10048825	F030434	N/A	MQTDMVIVEMAQTVKVVLDYSQEVQSHATGFARSTGVVANKPDHAGRYNTKLNYHEFVSENSEAVGSEIALAQYMCVKNFVPTVDTFRDEPDLEVGSIGFEIKWTKYINGHLIIHRDYPRLDDIAVLVVGKSPVYEIAGWMPVKWCKQAKYLNAMDGNYWISQRDLFEIDTLRKSIYGITEA*