NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136551_1003117

Scaffold Ga0136551_1003117


Overview

Basic Information
Taxon OID3300010388 Open in IMG/M
Scaffold IDGa0136551_1003117 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3942
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location NameJussy, Geneva, SWITZERLAND
CoordinatesLat. (o)46.25Long. (o)6.28Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F001125Metagenome / Metatranscriptome769Y
F005741Metagenome / Metatranscriptome391Y
F021481Metagenome / Metatranscriptome218Y
F034472Metagenome / Metatranscriptome174N

Sequences

Protein IDFamilyRBSSequence
Ga0136551_10031171F021481N/AMSPILDTAKGRFYKKGDVFTTGKSGITGTISEIISVRPNLTKLGLNTENGLRWAMVKIGA
Ga0136551_100311710F034472AGGAMPNWVYNTLTIQGPKSEVDMIKDRLNKPFTLAQETYGMGDISSSGFPTKFEVV
Ga0136551_10031172F005741N/AMKNRYRVEIYDANKLNDVTIYSDSGVDKDYLTELVFSNLRKFSGRVNAYVFDNVKKKKTTAMFLDESVVTKYKVA*
Ga0136551_10031176F000311GAGGMYFELTAPSQVAFARAIWEADMIGLDPQQIEPLTFNVGTGSIEKVSRIRDKYNLVESYTSDYEPTGYTGR*
Ga0136551_10031179F001125GGCGGMGDRANFGFKDSKGDTLYLYGHWAGHNMLANLAEAVSAAESRWQDESYATRIAISNLVGDEWTQTTGWGLSINHILDNEHKVPVINWTDKTFTLFEEDLTTEVFSLSLADFVQKYSRLVMV*

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