Basic Information | |
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Taxon OID | 3300010388 Open in IMG/M |
Scaffold ID | Ga0136551_1002466 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4508 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (40.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland |
Source Dataset Sampling Location | ||||||||
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Location Name | Jussy, Geneva, SWITZERLAND | |||||||
Coordinates | Lat. (o) | 46.25 | Long. (o) | 6.28 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F002997 | Metagenome / Metatranscriptome | 514 | Y |
F043944 | Metagenome | 155 | Y |
F054875 | Metagenome | 139 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0136551_10024663 | F043944 | N/A | MIFNGHTLETIEELDDVTLANIQTMYADGMVGNYGILTQIASLTNGVFNYMRPASSPPYKLANILGSAYDYIYPPLTEEQQKAAVNDSLLAFMSQANGFDKTKFGVKDG* |
Ga0136551_10024664 | F054875 | AGGA | MTKLGSAFGEKYQAKRKDLLTRSFVLNGHTFKVRIPLVAESDAIYKKVSDPAEEMVKKIYQEITAPLRQFENNQTEDFEFTDDDILVEGRSMREAAKNKAITEARITEFFKLLVPEMEGVTLDDLTYADIEEEFPIAVQMLIVEKIGEVISPTYREARGN* |
Ga0136551_10024669 | F002997 | GAGG | MAIARFEQIEVNNLAFAKSDFGEQSTAKTLWFKTRARVHSVANSLKISEKYRLYQDVVNFTLNYTPNTREMVRNQNLYSITYNGFDWRIDNIRESDDRMMVVIIAYRTDPVTAV* |
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