Scaffold Ga0136551_1001876

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1001876
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5279
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004639	Metagenome / Metatranscriptome	429	Y
F063483	Metagenome	129	Y
F074577	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_100187611	F074577	GGA	MARKRPTIDLDTYSALDAYAIALNEYYKSLRKAGFSETHAFWILGDRESFPDWIIPNLPNRIDNIPYDDEDDD*
Ga0136551_10018765	F004639	GAG	MGHVTFLNQDGEWEQFPNEEQQANLRENAKLLEELGYVLICQLCNKFPNRTQIRSRYLKNEWTCEECGTVNSAGKA*
Ga0136551_10018768	F063483	AGG	MNSDHIIMAALALGGVVGFLWGYSQGHEHGKIAGRIAYRKAQRSLEQVGR*