Scaffold Ga0136551_1001807

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1001807
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5386
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020538	Metagenome / Metatranscriptome	223	Y
F030374	Metagenome	185	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_10018072	F030374	N/A	MSKRLPGLVIEVENLPDFLAKSDEDILQHVRSVLLLRAYAVQRAQLAKCDGVQFSPTKDSCVFSAKGRALLHVRFAQLKA*
Ga0136551_10018075	F020538	AGAAG	MIPIPAGCARFLCYGWIITGVCFVLGLNKNGEDLSGAGLMPIGLGVLGLYVTRPRKE*