Scaffold Ga0136551_1001466

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1001466
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6050
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F011386	Metagenome / Metatranscriptome	291	Y
F021757	Metagenome	217	Y
F025743	Metagenome	200	Y
F095473	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_10014661	F011386	AGGAG	MKITLTSMQGNTRNIELATKQEVYDFIELFKSTLLPSQRMKITCDLLGIDGYLQGANKI*
Ga0136551_100146611	F021757	GAG	MMTRKDYVAVAEILSSYKELIGDEFTFHDLVDDFGSMFEADNPNFKFEKFREACEK*
Ga0136551_100146616	F000808	AGGA	MEYNYSLTIAYDGALVSTTRSADMLEIVTAWNKCVDFGDAKEYATYNLSDPMGKMYTKTFYRNGNVSVK*
Ga0136551_100146618	F025743	N/A	MRGNKMTATIANMELVYADLLTPGQLMEGDLINIDMDIVEVIAIVDDATGDNYTITYRNDYGEENEYSCNYEEMFKLYVFIDRDEE*
Ga0136551_10014662	F095473	N/A	MKCKVIRCESTELVYSGTDAFMLGGIPTETYCYDCANAYNQISNGMARLLADTETTSTLTTSC*