Basic Information | |
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Taxon OID | 3300010388 Open in IMG/M |
Scaffold ID | Ga0136551_1001466 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6050 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (80.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland |
Source Dataset Sampling Location | ||||||||
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Location Name | Jussy, Geneva, SWITZERLAND | |||||||
Coordinates | Lat. (o) | 46.25 | Long. (o) | 6.28 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000808 | Metagenome / Metatranscriptome | 882 | Y |
F011386 | Metagenome / Metatranscriptome | 291 | Y |
F021757 | Metagenome | 217 | Y |
F025743 | Metagenome | 200 | Y |
F095473 | Metagenome | 105 | N |
Protein ID | Family | RBS | Sequence |
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Ga0136551_10014661 | F011386 | AGGAG | MKITLTSMQGNTRNIELATKQEVYDFIELFKSTLLPSQRMKITCDLLGIDGYLQGANKI* |
Ga0136551_100146611 | F021757 | GAG | MMTRKDYVAVAEILSSYKELIGDEFTFHDLVDDFGSMFEADNPNFKFEKFREACEK* |
Ga0136551_100146616 | F000808 | AGGA | MEYNYSLTIAYDGALVSTTRSADMLEIVTAWNKCVDFGDAKEYATYNLSDPMGKMYTKTFYRNGNVSVK* |
Ga0136551_100146618 | F025743 | N/A | MRGNKMTATIANMELVYADLLTPGQLMEGDLINIDMDIVEVIAIVDDATGDNYTITYRNDYGEENEYSCNYEEMFKLYVFIDRDEE* |
Ga0136551_10014662 | F095473 | N/A | MKCKVIRCESTELVYSGTDAFMLGGIPTETYCYDCANAYNQISNGMARLLADTETTSTLTTSC* |
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