NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136551_1001466

Scaffold Ga0136551_1001466


Overview

Basic Information
Taxon OID3300010388 Open in IMG/M
Scaffold IDGa0136551_1001466 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6050
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location NameJussy, Geneva, SWITZERLAND
CoordinatesLat. (o)46.25Long. (o)6.28Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F011386Metagenome / Metatranscriptome291Y
F021757Metagenome217Y
F025743Metagenome200Y
F095473Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0136551_10014661F011386AGGAGMKITLTSMQGNTRNIELATKQEVYDFIELFKSTLLPSQRMKITCDLLGIDGYLQGANKI*
Ga0136551_100146611F021757GAGMMTRKDYVAVAEILSSYKELIGDEFTFHDLVDDFGSMFEADNPNFKFEKFREACEK*
Ga0136551_100146616F000808AGGAMEYNYSLTIAYDGALVSTTRSADMLEIVTAWNKCVDFGDAKEYATYNLSDPMGKMYTKTFYRNGNVSVK*
Ga0136551_100146618F025743N/AMRGNKMTATIANMELVYADLLTPGQLMEGDLINIDMDIVEVIAIVDDATGDNYTITYRNDYGEENEYSCNYEEMFKLYVFIDRDEE*
Ga0136551_10014662F095473N/AMKCKVIRCESTELVYSGTDAFMLGGIPTETYCYDCANAYNQISNGMARLLADTETTSTLTTSC*

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