Scaffold Ga0136551_1001228

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1001228
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6695
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F003784	Metagenome	468	Y
F041090	Metagenome	160	Y
F093483	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_100122811	F001477	AGGAGG	MSNVYAFHPVKSPLINLYEIVEPNGGAEWGGNDPYDAITWLRLAPEGSRVLVSGWESDEEDAHLVGQPIDITDIIKQAREVGR*
Ga0136551_100122815	F093483	AGGCGG	MTIERVRHSGAVIVSALVSWEGVKWLESATYYGYTIREAKASFRDSCNRLNYEIES*
Ga0136551_10012282	F003784	GAG	MDSNATDYSAYGLSHLKPGPEHRDNNYSPNPNPLVDHPAVIDYRTAGVTTDDLVSFIESFASLRASRVKKIGHDQYSHAKGQKFESFTATDTVRELIEELADASNYIDFLAIKLLNLASTMEQSEVNCD*
Ga0136551_10012288	F041090	AGGAGG	VRTEELSSNIVKLSDIRRERARACSPYGPVRAGLTTSQRIVEDRQLTELLSSLESVVASLNSKSSTVLDTLESAIQGARVALSASTPDTVGTS*