Scaffold Ga0136551_1001072

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1001072
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7202
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura atramentaria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008023	Metagenome / Metatranscriptome	340	Y
F012098	Metagenome / Metatranscriptome	283	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_10010722	F012098	AGAAG	MPKVHNIGPVFVQVTRFPYEWGNKLVVRGWSQEIEEPYRTATPFIVRLPKYHGLVLGKWGAMKEEEEALSGALARREVTYDDFTEEAGWTPAADSNREASVEGLYSRFDLMDGAVNVYDRQEHLIVAETPERG*
Ga0136551_10010729	F008023	AGGAG	VANTPVSPLDATGRAKEQATKKNAAELKKRAEEISIATQLEAESLEKDVFDPKNPDAPLVLDEIENVGVSTAGDMVVIRTITDIEDMTYGVGNTFTFKAGVKYRVP