Scaffold Ga0136551_1000667

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1000667
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9394
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001957	Metagenome / Metatranscriptome	611	Y
F019762	Metagenome / Metatranscriptome	228	Y
F024559	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_100066711	F001957	AGGAG	MNSVDMMHELINRAKNLQEFTITTDVPEDFRFNGVIPFDMEIKEGVIYAKVFGIDFNEAVATFDAYLETCK*
Ga0136551_10006674	F019762	AGGAG	MKLHESIAHTRKEMTIKESEAFRVRMVKHEVISPVGLFSLDLIQESFNKEGEIFQTSTYNFFMTKDELQSLAYGLTA*
Ga0136551_10006676	F024559	GGAGG	MIKSLLKLIVGIALIVAVIVIGPLAGIWSLNVLFPVLAIPYTFETWAAFLLIFGSATGLRFGSR*