Scaffold Ga0136551_1000409

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136551_1000409

Scaffold Ga0136551_1000409

Overview

Basic Information
Taxon OID	3300010388 Open in IMG/M
Scaffold ID	Ga0136551_1000409 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12194
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (57.89%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location Name	Jussy, Geneva, SWITZERLAND
Coordinates	Lat. (^o)	46.25	Long. (^o)	6.28	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000961	Metagenome / Metatranscriptome	820	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_10004093	F000961	N/A	MTDIDPVKYGVLWQKVQDYERRFDDMDKKMDKMEANVEKLVALANQGRGGFWAGMALVSAFSSAIGYLSSWFHK*

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