Scaffold Ga0136551_1000359

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1000359
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13364
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (87.18%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F001019	Metagenome / Metatranscriptome	804	Y
F003663	Metagenome / Metatranscriptome	474	Y
F004666	Metagenome / Metatranscriptome	428	Y
F014250	Metagenome / Metatranscriptome	264	Y
F015208	Metagenome / Metatranscriptome	256	Y
F038241	Metagenome / Metatranscriptome	166	Y
F084151	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_100035910	F038241	GGAGG	MLGYTESELDEMINSIHDAKLFYARHAEVIALEEDPIFLGLLKANDFLQGLWAEGYFDNA
Ga0136551_100035912	F000450	AGGCGG	MGDRANFVFVQPNGESIVLYGHWGGYQMLANLAEAAVKAQNRWSDPSYATRIAISHLIGEGWAMETGWGLYVNQIGDNEHKIAVIDFEQRTFSLHEEAPYADKSNKVQGMKNEAIFTQDLSNFCDKYSDSLLKV*
Ga0136551_100035915	F000311	AGGAGG	MYFELTAPSQLAFKRAFWEAETIGLDPMQLEALTFNIGTGSIEKVSRIRDKYDLTESYISEYEPTGYTGRI*
Ga0136551_100035927	F003663	AGGTGG	MLATAIEIVEATKSAIFDDEIMGLAGELHTRRNEINDRDYPKYLYMYSTALASKVADLVTKACLTEAQMSVLLDTIIEMDELTETILEENE*
Ga0136551_100035931	F015208	AGG	MYKITAANDGNPIHWEREYSDELNAHEEFAKFIDWGFADEYSTINLHTPTGKCYTKIFHRNGKVVKR*
Ga0136551_100035933	F000447	AGGA	MGYIEIFRITEEGAGWVDLSEATDEEKLDLEIGLFQEGAI*
Ga0136551_100035936	F084151	AGAAG	MTITYAIWQGSILLSVNNIATSIKDIDKVIAELNDSDVAKKIKFSANIQKVEVK*
Ga0136551_10003594	F004666	N/A	MDPIMATKREYLKSKGITVGQRGRFSSAAVKAINEAESQGVKFEAETKAKKA*
Ga0136551_10003596	F001019	GGA	MTYEPSLEILEVNYSCSPGGVDMFEVYDTNEPSTVPIYETESLTKAVQYCYNLGKDFIVRTFAEWEERELMNA*
Ga0136551_10003598	F014250	AGGA	MRDIDYQFDPRLKKLVDLGESGTDILHGELKNLMLEAETQLGLAQAQEDETEEAMDSMERTYWEGQLDALTHVYQLTYDLAFAIDERIKARG*