NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136551_1000324

Scaffold Ga0136551_1000324


Overview

Basic Information
Taxon OID3300010388 Open in IMG/M
Scaffold IDGa0136551_1000324 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14051
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (81.58%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Associated Families10

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location NameJussy, Geneva, SWITZERLAND
CoordinatesLat. (o)46.25Long. (o)6.28Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001507Metagenome / Metatranscriptome681Y
F002515Metagenome / Metatranscriptome552Y
F002598Metagenome / Metatranscriptome544Y
F002935Metagenome519Y
F004840Metagenome / Metatranscriptome421Y
F011487Metagenome / Metatranscriptome290Y
F021757Metagenome217Y
F045756Metagenome152Y
F066779Metagenome / Metatranscriptome126Y
F093845Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0136551_100032414F011487AGGAGMANMYESVSDEFYDEYYSTVCPSCKENAVDAYEEKCTHCLLEEMSATYNEDIALEMSLGLEY*
Ga0136551_100032415F002515N/AMKKTPEELRRLMELRRSNAASAVPSKKAYTRKGRKCQSEMLQLKYKNH*
Ga0136551_100032419F004840AGAAGGMDYEYVITSAYDGEEPHWTQRYELEYGAWENFFLFTDWGMANEYRTVNLYTPTGKCYTKLFYRDGRVVVK*
Ga0136551_100032422F021757GAGMMTRKDYVAVAEILSSYKDGMVDEFWFADLVLDFAGLFAEDNPNFKEDKFREACGI*
Ga0136551_100032425F002598AGAAGGMATKLYTIESLLVGKHYRSRNRYFQGEIISAEKRDGIWYGENTEAYLIEINAGGLRNQFATIAVKVGE*
Ga0136551_100032426F045756AGGAGMTKYNVIVSYVCEANDELSAIFALNKTLMPLSENELEKFNAFHVEEVQE*
Ga0136551_100032432F066779AGGAMFSLKYTIEYNTDPAYPLSKNFGTCLGYLVETEEQANEALDLLALRGTILTVSLDEIKDYKPSKRVVYATTRSWE*
Ga0136551_100032433F093845AGAAGMINVTLTSTSGTTKGMKFDTKENVLEFVKQYGKVLPQGTAVCIDAPLIGIHSGWIQGQA*
Ga0136551_10003246F001507AGGAMTTTYKPYTIAELVETIYEDNFSHFDFMENMNGGDCDCHLHQTMNTIVKYWGE*
Ga0136551_10003247F002935AGGAMRNRTKGYVGQIVDGKKLATIANAIYDLQYSGGASSCTVDNLLLITLEEKNVFGDNKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKECLTDQTEDISEYIRVFGDRLDNNCYLWQSKMSVVKDMIEA*

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