Scaffold Ga0136551_1000324

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1000324
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14051
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (81.58%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F002515	Metagenome / Metatranscriptome	552	Y
F002598	Metagenome / Metatranscriptome	544	Y
F002935	Metagenome	519	Y
F004840	Metagenome / Metatranscriptome	421	Y
F011487	Metagenome / Metatranscriptome	290	Y
F021757	Metagenome	217	Y
F045756	Metagenome	152	Y
F066779	Metagenome / Metatranscriptome	126	Y
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_100032414	F011487	AGGAG	MANMYESVSDEFYDEYYSTVCPSCKENAVDAYEEKCTHCLLEEMSATYNEDIALEMSLGLEY*
Ga0136551_100032415	F002515	N/A	MKKTPEELRRLMELRRSNAASAVPSKKAYTRKGRKCQSEMLQLKYKNH*
Ga0136551_100032419	F004840	AGAAGG	MDYEYVITSAYDGEEPHWTQRYELEYGAWENFFLFTDWGMANEYRTVNLYTPTGKCYTKLFYRDGRVVVK*
Ga0136551_100032422	F021757	GAG	MMTRKDYVAVAEILSSYKDGMVDEFWFADLVLDFAGLFAEDNPNFKEDKFREACGI*
Ga0136551_100032425	F002598	AGAAGG	MATKLYTIESLLVGKHYRSRNRYFQGEIISAEKRDGIWYGENTEAYLIEINAGGLRNQFATIAVKVGE*
Ga0136551_100032426	F045756	AGGAG	MTKYNVIVSYVCEANDELSAIFALNKTLMPLSENELEKFNAFHVEEVQE*
Ga0136551_100032432	F066779	AGGA	MFSLKYTIEYNTDPAYPLSKNFGTCLGYLVETEEQANEALDLLALRGTILTVSLDEIKDYKPSKRVVYATTRSWE*
Ga0136551_100032433	F093845	AGAAG	MINVTLTSTSGTTKGMKFDTKENVLEFVKQYGKVLPQGTAVCIDAPLIGIHSGWIQGQA*
Ga0136551_10003246	F001507	AGGA	MTTTYKPYTIAELVETIYEDNFSHFDFMENMNGGDCDCHLHQTMNTIVKYWGE*
Ga0136551_10003247	F002935	AGGA	MRNRTKGYVGQIVDGKKLATIANAIYDLQYSGGASSCTVDNLLLITLEEKNVFGDNKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKECLTDQTEDISEYIRVFGDRLDNNCYLWQSKMSVVKDMIEA*