Scaffold Ga0136551_1000068

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1000068
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26810
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (83.87%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F011761	Metagenome / Metatranscriptome	287	Y
F023848	Metagenome	208	Y
F028717	Metagenome / Metatranscriptome	190	Y
F058142	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_10000682	F023848	GAG	MNQQNIEIPLFGEQKTILADWLTTDKHNIDIVPVGSGKTFLAAIALPIFASDPRFHKGKDIIYSAPTGAMIKSLIWEPLKQSCIKHFNLVDGKDINNSELTIKFPGGVFIRCKSAEQRENLRGLNVGVWIADEAALYTQDTLQEITNRLRPKVGQPDTAGRLIVISTPNGNGPLYDLFQSAMAMPSKYIVRHYNYMQMRSGNRNFIEEQKRILSPLKFAQDYMCSWDQVENQFFYTWNKHKYTVDMIPDRMGDLYSFHDFNKRRMTAIVAQVINPGKKDGTIEILKSYAINDCSTEGIAQAIRNDFPRRRINSIIDMSGTQVNRDTTSPFGITDRVILEKYGFTIVNNRNSNPLIADTDNTSNSFINRGGLLVAKDDKILLDALGTYHFEDGSRKKLVKYTEQAYAHIDGLGDCVRYGIHHLFPIHHEGTDMPEYVTSDGRFTKRAGSEHLPHSPLYPGGPSWEQILNEDQQGNEDYVSW
Ga0136551_10000686	F028717	AGGA	MSDFKDEFVGNDNATDNQSVDNTSLENGTDAPKVNPGSIRKSQTNSILNALSNAAGVQFESVEAAAAWAARVGASQTNGGNVQPVEKPTQQSKSRGKDSDLHEQFSKLQLDLQVKEQRLREKELDSDIQRNMGDRFDSDLLDYALSKIKSNIQWNDDGTYSIVNSKGQERYGQDGNPLSLQGLVQEVAKGNPKLLKQSGQNSGSGLRPGQGGFAGESSEAIPDYTRDPAAFNAWAQRNGLGKNIGLKGMSVSASVSSGSKKIF*
Ga0136551_10000687	F011761	AGGAG	MAYVLGGSNNEADGFTTAIANFALRAMHESNGLVNMTNVVTPTQGNEYLVPTFQAITYQDYNPAGSGGSAGYGNANIQNPALGQNSITATPAVATTAFDVFYGWTTSFQLAATLGSELGESFAEKVDQRVTKAFLSFKATAGNTMEAQSADGFYRVAALGAMELIPEGVTPTTPTAGFTTDSVVTMVRNIKQNFKVARMPGSPVIIIDSNGDDGVVGSTLNRLLSELTGGAVSQTGGSNLSALGNELLSTGKIENIYGCQVMATTFLPTATRTVAGTSGVSVLVGAYFGDSALFTVIKEGLQIKTGEAPQGLQQWLTGLGYFGAGVGDGRRGGAINIVQA*
Ga0136551_10000688	F002260	AGGA	MSVPYQRISDATIADIIFYDPAAERRATSLNVEWDPYFKVSSQEWLYKMEFGWWQKYCDTVFGANYYTNNSAGALISAFNPDQLIKSDQTLIRLDTFGAILVFYESLVTDVSNMNEVDLQNYEFAKTRCQNEWTKAIELMNWYDLYMNAPDGPTTKLEENWTADVDYFNNDRRYF*
Ga0136551_10000689	F058142	AGGAG	MAATILNAPLVTTSDIIAVLQRDIPKAWAIPIYDDFPSDSDIVRYGIYVSDVHTIERNPHQLGVQYCGTIYHAYDGFRVVYVSFQDDQHNIDLNAIIANLVVAVKNNGEQLFDGYFERNFDQDLNYGVNAEKHTWAFRLLRLEFNT*