NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136806_1405340

Scaffold Ga0136806_1405340


Overview

Basic Information
Taxon OID3300010386 Open in IMG/M
Scaffold IDGa0136806_1405340 Open in IMG/M
Source Dataset NameAcid mine drainage microbial communities from Malanjkhand copper mine, India - M8 kmer 63
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterXcelris labs Ltd
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1556
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. ITM-2016-00318(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Mine Drainage → Sediment → Acid Mine Drainage Microbial Communities From Malanjkhand Copper Mine, India

Source Dataset Sampling Location
Location NameMalanjkhand, India
CoordinatesLat. (o)21.9985Long. (o)80.697983Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004378Metagenome / Metatranscriptome441Y
F011318Metagenome / Metatranscriptome292Y

Sequences

Protein IDFamilyRBSSequence
Ga0136806_14053402F011318N/AXXXXAATQKVIAEFDRFGESLLGKEAYWQRASGRRAAARPDTDVVPPEVLPGEEEG*
Ga0136806_14053403F004378N/AVSELDRLETAMHECREMIREAHAATKDLRAAVREARQEVRALARDEVAAQVQLEVSRQLEELXXXXXX

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