NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136806_1271923

Scaffold Ga0136806_1271923


Overview

Basic Information
Taxon OID3300010386 Open in IMG/M
Scaffold IDGa0136806_1271923 Open in IMG/M
Source Dataset NameAcid mine drainage microbial communities from Malanjkhand copper mine, India - M8 kmer 63
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterXcelris labs Ltd
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)680
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Mine Drainage → Sediment → Acid Mine Drainage Microbial Communities From Malanjkhand Copper Mine, India

Source Dataset Sampling Location
Location NameMalanjkhand, India
CoordinatesLat. (o)21.9985Long. (o)80.697983Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002672Metagenome / Metatranscriptome538Y

Sequences

Protein IDFamilyRBSSequence
Ga0136806_12719232F002672GGAGMAGIQARLVGVELYFENLERAKKFYMQTMGLEVSDEQVGHHVKFDGGAGFVCLERAGVESYTSQDKAVLFFEVPDLASAIAVVGQDQVIHAEKTWAVLHDPEGHNILL

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