Scaffold Ga0136806_1002400

Overview

Basic Information

• Taxon OID: 3300010386
• Scaffold ID: Ga0136806_1002400
• Source Dataset Name: Acid mine drainage microbial communities from Malanjkhand copper mine, India - M8 kmer 63
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Xcelris labs Ltd
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24684
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (78.57%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Mine Drainage → Sediment → Acid Mine Drainage Microbial Communities From Malanjkhand Copper Mine, India

Source Dataset Sampling Location

• Location Name: Malanjkhand, India
• Coordinates
  • Lat. (^o): 21.9985
  • Long. (^o): 80.697983

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013332	Metagenome / Metatranscriptome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136806_100240025	F013332	N/A	VLNSISADSPPIRSQPHPWHSTKDTRLLACLTTLAGLTGGISHLWSLLLVEAEVLDVNTRRALAGFLGFAATVALVGAVATQPFASHPTVAHAAAGQSLCIAHHPQDFVWYTHSCTGHDEPGIDPLSNQAGSAQNLTWTVQLPSNGAAQVDSVGPTFWIGGAVTDPNSLDNQAFLELQFYPNSRVTNCTAGGGYDVTYDPGAYTACSPVWEVSKTGSSESAAFNAMLTDSATGGPLVMHQGDTITDHQYITAAADGMHITVTDLTTGHSGTIVLHSKIDGPLMPAYSVQKLGNALAWGLVDDAPNSLVWEIGHTGDYTTPAGQYCVPGSATKPPCYSYNTPTWLQFSPLVVKGVSFGSDSPAQSWSVVSDFGGEAEVNQYCGAANYGQPFCSYPWYALNKSLGGFTYGGDYPGTTKDYGQALQFQQTMQCPSPYGPNTTYCSTILK*