Scaffold Ga0136449_102092324

Overview

Basic Information

• Taxon OID: 3300010379
• Scaffold ID: Ga0136449_102092324
• Source Dataset Name: Sb_50d combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 831
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051331	Metagenome	144	N
F061478	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136449_1020923242	F061478	AGG	MQAARIEINYDGTPMEVFLQIRVGRLRLYHAAARDRLGVVQETWKRGTLGKTFLVRPIAGQIVGEEVVDSTGRVIAVFGLAITNAFLPDPRPQREYREKLRTLLNQL*
Ga0136449_1020923243	F051331	N/A	MKNLICLAMLLVAPLSHAGTVKLWDGKKRGMDLVAVGHKRVTVFLADGRTTVLGIPILVEKPKAAVPVTGNKSATPKR*