Scaffold Ga0136449_100869791

Overview

Basic Information

• Taxon OID: 3300010379
• Scaffold ID: Ga0136449_100869791
• Source Dataset Name: Sb_50d combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1475
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014894	Metagenome / Metatranscriptome	259	Y
F036810	Metagenome	169	Y
F045709	Metagenome / Metatranscriptome	152	Y
F070426	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136449_1008697911	F014894	AGGA	MSIGVPGISVYFEHHQVKPFIKDQSKKAKELFHERVVPAVLRGTFKALEVVANNTADSHDYLISKLKTK
Ga0136449_1008697912	F045709	GGAGG	VNLTPSQKGSFLAGIGLWVLIWASIWKADDIAAAMRIQRWFNSSRCIRWIGRHKSTSLLGTELVNYGTHGLDPLGVSFSLGGTLVNVLFIYLLLPCLEKLLRQRGTANATLQ*
Ga0136449_1008697913	F070426	GGAGG	MLLELIVATEASVLSASWIRRSRMRRRQILLGGSASEITLPFLDGYLRRQTTNPTRLQTFAAQRLAAICRRAVHTKAFELLVLKLIQSASRRSRWESEISKVEVIL*
Ga0136449_1008697914	F036810	AGGAG	MSQPERTRVSRWTRLWSFAVDRYKAVQLSIERRSFESKLERIVRNALAHQSVGLPAGHPQFKLLRQQADSTCAKFAHRWNITPDLLDGQIPAIRKLKSLADPAPKPEPAVLVSLGVGGAAALFFLIGILAGLTSVGCHLIGGR*