Scaffold Ga0136449_100301393

Overview

Basic Information

• Taxon OID: 3300010379
• Scaffold ID: Ga0136449_100301393
• Source Dataset Name: Sb_50d combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2922
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004607	Metagenome / Metatranscriptome	431	Y
F017878	Metagenome / Metatranscriptome	238	Y
F019711	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136449_1003013933	F019711	N/A	MNAVEYFQGNRDAKKEALVRAIFGTFMGGLIMLLILLYAGAPIV*
Ga0136449_1003013934	F017878	GGAG	MSETAIQFLERWRQAHVYAELRALEQLDETVAECTGAAVEDGISADDLEKAAGGSLKEYIRTAIINTSE*
Ga0136449_1003013936	F004607	GGAG	MEGFVIRQNVEHYRAMLKVTTDLEQRGVIEKLLCEEEAKLKKYDEDHKKNPPASSKTA*